Abstracts grouped by Topic

General neuroinformatics (35)

Computational neuroscience (38)

Digital atlasing (17)

  • NeuroMorphoNaut: An Open Source Tool to Make Anatomy Less Tedious
    Andrew J. Worth (Neuromorphometrics, Inc.), Gregory L. Millington (Neuromorphometrics, Inc.), Jason Tourville (Boston University)
  • Integration of 3D gene expression maps of ViBrism-DB into the standard coordinate Waxholm Space
    Yuko Okamura-Oho (Bio-research Infrastructure Construction Team, RIKEN Advanced Science Institute, Japan), Masaomi Nishimura (Bio-research Infrastructure Construction Team, RIKEN Advanced Science Institute, Japan), Satoko Takemoto (Bio-research Infrastructure Construction Team, RIKEN Advanced Science Institute, Japan), Hideo Yokota (Bio-research Infrastructure Construction Team, RIKEN Advanced Science Institute, Japan), Gang Song (Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania, USA), James Gee (Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania, USA)
  • A Digital Atlas of the Guinea Pig Brain. A Comparative Study of qMRI at 3T with Histological Sections.
    Marie Drottar (Boston University Division of Graduate Medical Sciences: BioImaging Program), Hernan Jara (Boston University Medical School Department of Radiology)
  • Serving three-dimensional models of brain structures online
    Piotr Majka (Nencki Institute of Experimental Biology, Poland), Jakub M. Kowalski (Nencki Institute of Experimental Biology, Poland), Rembrandt Bakker (Radboud University Nijmegen, Donders Institute for Brain, Cognition and Behaviour, Netherlands), Daniel K. Wójcik (Nencki Institute of Experimental Biology, Poland)
  • Bringing Data into the INCF Digital Atlas-based Sharing Framework
    Jyl Boline (Informed Minds, USA), Richard Baldock (MRC Human Genetics Unit and IGMM, UK), Rembrandt Bakker (Radboud University, Netherlands), Janis Breeze (INCF, Sweden), Albert Burger (MRC Human Genetics Unit and Heriot-Watt University), James Gee (University of Pennsylvania, Philadelphia, USA), Christian Haselgrove (University of Massachusetts Medical Center, USA), Mike Hawrylycz (Allen Institute for Brain Science, USA), Andreas Hess (Institute of Experimental and Clinical Pharmacology and Toxicology, Germany), Luis Ibanez (Kitware Inc., Clifton Park, USA), G. Allan Johnson (Duke Center for In Vivo Microscopy, USA), Stephen Larson (University of California, USA), Lydia Ng (Allen Institute for Brain Science, USA), Yuko Okamura-Oho (RIKEN Advanced Science Institute, Wako, Japan), Seth Ruffins (Biological Imaging Center, California Institute of Technology, USA), Fons Verbeek (Leiden Institute of Advanced Computer Science, Leiden University, Netherlands), Ilya Zaslavsky (San Diego Supercomputer Center, University of California, USA)
  • Plugin architecture for the INCF Scalable Brain Atlas: CoCoMac and beyond
    Rembrandt Bakker (Donders Institute, Radboud University Nijmegen), Markus Diesmann (Institute of Neuroscience and Medicine (INM-6), Research Center Jülich), Thomas Wachtler (Department Biology II, Ludwig-Maximilians-Universität München)
  • Three-dimensional atlas framework for mapping of projections from the entorhinal cortex to the hippocampal formation in rat
    Lisa J Kjønigsen (CMBN & IMB, UIO, Oslo, Norway), Trygve B Leergaard (CMBN & IMB, UIO, Oslo, Norway), Menno P Witter (KI-CBM, NTNU, Trondheim, Norway & Dept. of Anatomy & Neuroscience, VUmc, Amsterdam, The Netherlands), Jan G Bjaalie (CMBN & IMB, UIO, Oslo, Norway)
  • Atlas Registration Services and Workflows within the INCF Digital Atlasing Infrastructure for Rodent Brain
    Ilya Zaslavsky (San Diego Supercomputer Center, University of California San Diego, USA), Steven Lamont (University of California San Diego, USA), Asif Memon (University of California San Diego, USA), Luis Ibanez (Kitware, Inc., USA), James Gee (University of Pennsylvania, USA), Stephen Larson (University of California San Diego, USA), David Little (University of California San Diego, USA), David Valentine (San Diego Supercomputer Center, University of California San Diego, USA), Richard Baldock (MRC Human Genetics Unit and IGMM, UK), Mike Hawrylycz (Allen Institute for Brain Science, USA), Janis Breeze (INCF, Sweden), Raphael Ritz (INCF, Sweden), Jyl Boline (Informed Minds, USA)
  • Development of Standard Services for Integrating Rodent Brain Atlases Based on Spatial Location
    Ilya Zaslavsky (San Diego Supercomputer Center, University of California San Diego, USA), Asif Memon (University of California San Diego, USA), David Little (University of California San Diego, USA), David Valentine (San Diego Supercomputer Center, University of California San Diego, USA), Stephen Larson (University of California San Diego, USA), Raphael Ritz (INCF, Sweden), Steven Lamont (University of California San Diego, USA), Richard Baldock (MRC Human Genetics Unit and IGMM, UK), Rembrandt Bakker (Radboud University, Netherlands), Albert Burger (MRC Human Genetics Unit and Heriot-Watt University, UK), Christian Haselgrove (University of Massachusetts Medical Center, USA), Mike Hawrylycz (Allen Institute for Brain Science, USA), Andreas Hess (Institute of Experimental and Clinical Pharmacology and Toxicology, Germany), Lydia Ng (Allen Institute for Brain Science, USA), Daren Lee (University of California Los Angeles, USA), Seth Ruffins (Biological Imaging Center, California Institute of Technology, USA), Fons Verbeek (Leiden Institute of Advanced Computer Science, Netherlands), Janis Breeze (INCF, Sweden), Jyl Boline (Informed Minds, USA)
  • Open Connectome Project: reverse engineering the brain one synapse at a time
    Joshua Vogelstein (Johns Hopkins University), Eric Perlman (Johns Hopkins University), Davi Bock (Janelia Farm Research Campus), Wei-Chung Lee (Harvard University), Bobby Kasthuri (Harvard University), Jeff Lichtman (Harvard University), Clay Reid (Harvard University), Albert Cardona (Institute of Neuroinformatics), Randal Burns (Johns Hopkins University), R. Jacob Vogelstein (Johns Hopkins University Applied Physics Laboratory)
  • Neuroinformatics web applications for 3-D analysis of brain connectivity: anatomical organization of subcortical projections from whisker and forelimb regions of the rat somatosensory cortex
    Izabela Maria Zakiewicz (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway), Jan G Bjaalie (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway), Trygve B Leergaard (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway)
  • Multimodal digital atlas of the rat brain: data integration in a high resolution volumetric template
    Eszter A Papp (University of Oslo), Trygve B Leergaard (University of Oslo), Y Jiang (Duke University Medical Center), G. Allan Johnson (Duke University Medical Center), Jan G Bjaalie (University of Oslo)
  • Constrain your data: relating detailed animal studies to spatial templates in neuroimaging
    Gleb Bezgin (Rotman Research Institute at Baycrest ), Rembrandt Bakker (Donders Institute for Brain, Cognition and Behavior)
  • Knife-Edge Scanning Microscope Brain Atlas: A Web-Based, Light-Weight 3D Mouse Brain Atlas
    Chul Sung (Texas A&M University), Ji Ryang Chung (Texas A&M University), David Mayerich (University of Illinois, Urbana-Champaign), Jaerock Kwon (Kettering University), Daniel Miller (Texas A&M University), Todd Huffman (3Scan), John Keyser (Texas A&M University), Louise Abbott (Texas A&M University), Yoonsuck Choe (Texas A&M University)
  • Reconstruction of the mouse brain regions from the spatial gene expression data
    Alexey Tsvetkov (Russian Scientific Centre “Kurchatov Institute”, Nano-, Bio-, Info-, Cognitive (NBIC) Center)
  • Rodent Brain Navigator: database and atlas system for microscopy and imaging data
    Ivar Moene (University of Oslo), Dmitri Darine (University of Oslo), Muthuraja Ramachandran (University of Oslo), Trygve B. Leergaard (University of Oslo), Jan G Bjaalie (University of Oslo)
  • Automated Atlas Annotation for Transgenic Mouse Lines
    Ken Sugino (Brandeis University), Yao Cheng (Brandeis University), Sacha Nelson (Brandeis University)

Neuroimaging (33)

Genomics and genetics (6)

Large scale modeling (12)

  • Bridging the gap between Computational Neuroscience and Systems Biology modelling
    Padraig Gleeson (Department of Neuroscience, Physiology and Pharmacology, UCL, UK), Sharon Crook (School of Mathematical and Statistical Sciences, School of Life Sciences, Center for Adaptive Neural Systems, ASU, USA), Robert Cannon (Textensor Limited, Edinburgh, UK), R Angus Silver (Department of Neuroscience, Physiology and Pharmacology, UCL, UK)
  • Statistical Parametric Networks (SPNs): A Principled Way of Constructing Functional and Anatomical Networks.
    Cedric Ginestet (King's College London), Andrew Simmons (King's College London), Ed Bullmore (University of Cambridge), Thomas E. Nichols (Warwick University)
  • A large-scale whole visual system model integrated by PLATO and its implementation on high performance computer
    Keiichiro Inagaki (RIKEN, Computational science research program), Takayuki Kannon (RIKEN, Brain science institute), Yoshimi Kamiyama (Aichi prefectural university), Shunji Satoh (University of electro-communications), Nilton Kamiji (RIKEN, Brain science institute), Daiki Sone (Aichi prefectural university), Kazuki Urabe (University of electro-communications), Shiro Usui (RIKEN, Brain science institute)
  • PLATO: Platform for integrating large-scale brain model from sub-system models
    Takayuki Kannon (RIKEN Brain science institute), Keiichiro Inagaki (Computational Science Research Program, RIKEN), Nilton Kamiji (RIKEN Brain science institute), Kouji Makimura (RIKEN Brain science institute), Shiro Usui (RIKEN Brain science institute)
  • Cx3Dp: A Parallel Framework for Modeling the Growth and Development of Neural Tissue
    Andreas Hauri (Institute of Neuroinformatics ETHZ/UZH), Rodney Douglas (Institute of Neuroinformatics ETHZ/UZH)
  • A realistic large-scale model of the retinal cone mosaic
    Yoshimi Kamiyama (Information Science and Technology, Aichi Prefectural University), Daiki Sone (Information Science and Technology, Aichi Prefectural University), Shiro Usui (RIKEN Brain Science Institute)
  • Managing Complexity in Multi-Algorithm, Multi-Scale Biological Simulations: An Integrated Software Engineering and Neuroinformatics Approach.
    Giovanni Idili (Department of Computing, Cork Institute of Technology, Cork, Ireland), Matteo Cantarelli (Department of Electric and Electronic Engineering, Università di Cagliari, Cagliari, Italy), Marius Buibas (Department of Bioengineering, University of California, San Diego, La Jolla, CA), Tim Busbice (InterIntelligence Research, Los Angeles, CA), Jay Coggan (Salk Institute, La Jolla, CA), Christian Grove (WormBase, California Institute of Technology, Pasadena CA), Sergey Khayrulin (A.P. Ershov Institute of Informatics Systems SB RAS, Lab. of Complex Systems Simulation, Novosibirsk, Russia), Andrey Palyanov (A.P. Ershov Institute of Informatics Systems SB RAS, Lab. of Complex Systems Simulation, Novosibirsk, Russia), Stephen Larson (Whole Brain Project, University of California, San Diego, La Jolla, CA)
  • LFPy: A tool for simulation of extracellular potentials
    Henrik Linden (Mathematical Sciences and Technology, Norwegian University of Life Sciences), Espen Hagen (Mathematical Sciences and Technology, Norwegian University of Life Sciences), Szymon Leski (Nencki Institute of Experimental Biology, Warsaw, Poland), Eivind S Norheim (Mathematical Sciences and Technology, Norwegian University of Life Sciences), Klas H Pettersen (Mathematical Sciences and Technology, Norwegian University of Life Sciences), Gaute T Einevoll (Mathematical Sciences and Technology, Norwegian University of Life Sciences)
  • A New State of MIIND
    Dave Harrison (University of Leeds), Marc De Kamps (University of Leeds)
  • Learning to see in a virtual world
    Jasmin Leveille (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Gennady Livitz (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Heather Ames (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Ben Chandler (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Anatoli Gorchetchnikov (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Massimiliano Versace (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Ennio Mingolla (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Greg Snider (Hewlett-Packard Laboratories)
  • Scaling of a biophysical neocortical attractor model with Parallel NEURON
    David Silverstein (Royal Institute of Technology, Stockholm Brain Institute), Anders Lansner (Royal Institute of Technology, Stockhom University, Stockholm Brain Institute)
  • Evaluating the Connection-Set Algebra for the neural simulator NEST
    Jochen Martin Eppler (Institute of Neuroscience and Medicine, Computational and Systems Neuroscience (INM-6), Research Center Jülich, Germany), Håkon Enger (Dept. of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Thomas Heiberg (Dept. of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Birgit Kriener (Dept. of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Hans Ekkehard Plesser (Dept. of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Markus Diesmann (Institute of Neuroscience and Medicine, Computational and Systems Neuroscience (INM-6), Research Center Jülich, Germany), Mikael Djurfeldt (PDC Center for High Performance Computing , KTH, Stockholm and INCF, Stockholm)

Neuromorphic engineering (0)

Brain machine interface (4)

Electrophysiology (9)

Infrastructural and portal services (9)

Clinical neuroscience (2)

  • Adaptive models of cortex cooperating with other brain parts
    Josef Faber (CTU Prague), Mirko Novák (CTU Prague), Zdenek Votruba (CTU Prague), Vít Faber (Vodafone)
  • Studying Brain & Behavior in Schizophrenia: Multivariate Surface Analysis of Hippocampus
    Sunil Kalmady (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), Ganesan Venkatasubramanian (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), Rashmi Arasappa (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), S Gautham (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), Naren P Rao (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), Rishikesh Behere (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), B N Gangadhar (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India)
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