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Abstracts
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General neuroinformatics (35)
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Endophenotypes of ADHD: A Study of the Relationship between ADHD and Enuresis
Courtney Tibbetts (Marywood University)
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Machine-Readable Description of Neuron Types and Properties
David J. Hamilton (George Mason University), Maurizio Bergamino (George Mason University), Javier DeFelipe (Tecnología Biomedica & Instituto Cajal), Nicolas Le Novère (EMBL-European Bioinformatics Institute), Gordon M. Shepherd (Yale Medical School), Menno P. Witter (Norwegian University of Science and Tech), Giorgio A. Ascoli (George Mason University)
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SVM-supported analysis of brain connectivity networks
Manuel André Gaudnek (Institute for Pharmacology, FAU Erlangen), Greg Neely (IMBA, Vienna/Neurosc. Prog., Garvan IMR), Josef Penninger (IMBA, Vienna), Andreas Hess (Institute for Pharmacology, FAU Erlangen)
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Realtime Visualization of the Connectome in the Browser using WebGL
Daniel Ginsburg (Children's Hospital Boston), Stephan Gerhard (Ecole Polytechnique Fédérale de Lausanne), Rudolph Pienaar (Children's Hospital Boston)
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Validation of Granger Causality within In Vitro Engineered Feed-Forward Cortical Networks
Sankaraleengam Alagapan (University of Florida), Liangbin Pan (University of Florida), Bruce Wheeler (University of Florida), Thomas DeMarse (University of Florida)
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Seminars with Professionals: An Effective Recruitment Strategy
Anu Gokhale (Illinois State University)
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The Connectome File Format
Stephan Gerhard (Signal Processing Laboratory 5, Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland)
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BioScholar: A user- centered biocuration and knowledge management system that uses models of experimental design to drive knowledge acquisition and literature mining of neural connectivity data
Marcelo Tallis (Information Sciences Institute / University of Southern California), Cartic Ramakrishnan (Information Sciences Institute / University of Southern California), Thomas Russ (Information Sciences Institute / University of Southern California), Gully Burns (Information Sciences Institute / University of Southern California)
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Collaborative and reproducible simulation and data analysis with Sumatra
Andrew Davison (UNIC, CNRS)
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A Neuroinformatics Framework For Linking Genetic and Neuroimaging Data
Timothy O'Keefe (Harvard University, Center for Brain Science), Victor Petrov (Harvard University, Center for Brain Science), Randy Buckner (Harvard University, Center for Brain Science), Gabriele Fariello (Harvard University, Center for Brain Science)
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A virtual reality exploration tool for multi-scale data from brain-scale simulations
Anette von Kapri (Virtual Reality Group – JARA, RWTH Aachen University), Tobias C. Potjans (Research Center Juelich, Institute of Neuroscience and Medicine (INM-6), Germany), Torsten Kuhlen (Virtual Reality Group – JARA, RWTH Aachen University), Markus Diesmann (Research Center Juelich, Institute of Neuroscience and Medicine (INM-6), Germany)
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Analysis of causal interactions among neural signals using Genetic Programming
Manoj Kandpal (National University of Singapore), Lakshminarayanan Samavedham (National University of Singapore)
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A MATLAB Based Toolbox for Processing and Analysis of Multichannel, Multisource Cortical Local Field Potentials
Mufti Mahmud (NeuroChip Lab, University of Padova), Alessandra Bertoldo (Dept. of Information Engineering, University of Padova), Stefano Girardi (NeuroChip Lab, University of Padova), Marta Maschietto (NeuroChip Lab, University of Padova), Stefano Vassanelli (NeuroChip Lab, University of Padova)
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Epileptic Seizure Detection Using Support Vector Machines
Negin Moghim (Heriot-Watt University and University of Edinburgh, Edinburgh)
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The NeuroDevNet Neuroinformatics Core
Elodie Portales-Casamar (Centre for High-Throughput Biology, University of British Columbia, Vancouver, BC, Canada), Alan Evans (Montreal Neurological Institute, McGill University, Montreal, QC, Canada), Wyeth W. Wasserman (Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver, BC, Canada), Paul Pavlidis (Centre for High-Throughput Biology, University of British Columbia, Vancouver, BC, Canada)
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Visualization and exploration of the transcriptomic landscape of the human brain
Chris Lau (Allen Institute for Brain Science, WA), Tim Dolbeare (Allen Institute for Brain Science, WA), Felix Lee (Allen Institute for Brain Science, WA), David Feng (Allen Institute for Brain Science, WA), Tim Fliss (Allen Institute for Brain Science, WA), Changkyu Lee (Allen Institute for Brain Science, WA), Angela Guillozet-Bongaarts (Allen Institute for Brain Science, WA), Zackery Riley (Allen Institute for Brain Science, WA), Barry Daly (University of Maryland School of Medicine, Baltimore, MD), Rao Gullipalli (University of Maryland School of Medicine, Baltimore, MD), Alan McMillan (University of Maryland School of Medicine, Baltimore, MD), Elaine Shen (Allen Institute for Brain Science, WA), Mike Hawrylycz (Allen Institute for Brain Science, WA), Chinh Dang (Allen Institute for Brain Science, WA), Allan Jones (Allen Institute for Brain Science, WA), Lydia Ng (Allen Institute for Brain Science, WA)
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An antibody registry for biological sciences
Anita Bandrowski (UCSD), Vadim Astakhov (UCSD), Jeff Grethe (UCSD), Maryann Martone (UCSD)
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Data management for Neurophysiology at the German INCF Node
Andrey Sobolev (Department Biology II, Ludwig-Maximilians-Universität München, Germany), Philipp Rautenberg (Department Biology II, Ludwig-Maximilians-Universität München, Germany), Jan Benda (Department Biology II, Ludwig-Maximilians-Universität München, Germany), Jan Grewe (Department Biology II, Ludwig-Maximilians-Universität München, Germany), Andreas Herz (Department Biology II, Ludwig-Maximilians-Universität München, Germany), Thomas Wachtler (Department Biology II, Ludwig-Maximilians-Universität München, Germany)
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Species, brain regions, and cell types: hierarchies for mining neuromorphometry
Sridevi Polavaram (George Mason University), Giorgio A Ascoli (George Mason University)
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FLICKER-FUSION FREQUENCY FOR ACOUSTIC SIGNALS
Ruben Tikidji-Hamburyan (KRINC, Rostov-on-Don, RF and LSU, N.Orleans, USA), Witali Dunin-Barkowski (NIISI RAS, Moscow, RF)
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Distribution of cells in mouse neocortex analysed with an open-source software utilising Ripley's K-function
Patrik Krieger (Karolinska Institutet), Kristin Hansson (Karolinska Institutet, Lund University), Mehrdad Jafari-Mamaghani (Karolinska Institutet)
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A new cognitive component of visualization tool for diagnosis and monitoring Alzheimer's disease and other dementias: COGVIT
Václav Papež (The University of West Bohemia, Pilsen, Czech Republic), Petr Jaroš (The University of West Bohemia, Pilsen, Czech Republic), Carmen Paz Suárez Araujo (University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain), Miguel Ángel Pérez del Pino (University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain), Patricio García Báez (University of La Laguna, La Laguna, Spain)
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NineML: declarative, mathematically-explicit descriptions of spiking neuronal networks
Anatoli Gorchetchnikov (Boston University ), Robert Cannon (Texttensor Limited), Robert Clewley (Georgia State University), Hugo Cornelis (Katholieke Universiteit Leuven), Andrew Davison (CNRS), Erik De Schutter (Okinawa Institute of Science and Technology), Mikael Djurfeldt (INCF), Padraig Gleeson (University College London), Sean Hill (INCF), Mike Hines (Yale University), Birgit Kriener (Max Planck Institute for Dynamics and Self-Organization), Yann Le Franc (University of Antwerp), Chung-Chuan Lo (National Tsing Hua University), Abigail Morrison (RIKEN), Eilif Muller (BBP-EPFL), Hans Ekkehard Plesser (Norwegian University of Life Sciences), Ivan Raikov (Okinawa Institute of Science and Technology), Subhasis Ray (National Center for Biological Sciences), Lars Schwabe (University of Rostock), Botond Szatmary (Brain Corporation)
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Logically defining Neurons in the Cell Ontology
Terrence F. Meehan (The Jackson Laboratory, Bar Harbor, ME), Christopher J. Mungall (Lawrence Berkeley National Laboratory, Berkeley, CA), Allan Ruttenberg (School of Dental Medicine, University at Buffalo, NY), Judith Blake (The Jackson Laboratory, Bar Harbor, ME), Alex Diehl (University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY )
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BAMS 2: a new workbench for construction and visualization of connectomes
Mihail Bota (University of Southern California), Stefan Talpalaru (Odeon Consulting Group Pte Ltd), Larry W. Swanson (University of Southern California)
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From recording to sharing of data - embedding metadata handling into the laboratory workflow using odML
Jan Grewe (Bernstein Center for Computational Neuroscience, Department Biology II, Ludwig-Maximilians-Universität München, Germany), Andrey Sobolev (Department Biology II, Ludwig-Maximilians-Universität München, Germany), Thomas Wachtler (Department Biology II, Ludwig-Maximilians-Universität München, Germany), Jan Benda (Bernstein Center for Computational Neuroscience, Department Biology II, Ludwig-Maximilians-Universität München, Germany)
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The Structural Network of Major Depressive Disorder
Saeideh Bakhshi (Georgia Tech), David Gutman (Emory), Constantine Dovrolis (Georgia Tech)
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Pattern recognition with a simple olfactory bulb model
Lucas Figueira (Neural Systems Lab - Physics Department - University of São Paulo), Antonio Carlos Roque (Neural Systems Lab - Physics Department - University of São Paulo)
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The Neuroscience Information Framework (NIF): A Unified Semantic Framework and Portal for Discovery and Integration of Biomedical Data and Resources on the Web
Jeff Grethe (UCSD), Amarnath Gupta (UCSD), Anita Bandrowski (UCSD), Fahim Imam (UCSD), Jonathan Cachat (UCSD), Gordon M Shepherd (Yale), Perry L Miller (Yale), Luis Marenco (Yale), Giorgio A Ascoli (Krasnow Inst. for Advanced Study, George Mason Univ), Paul Sternberg (Caltech), Hans Mueller (Caltech), Arun Rangarajan (Caltech), Maryann Martone (UCSD)
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NeuroLex.org: Integrating a community-driven neuroscience ontology with the web of linked data
Stephen Larson (Neuroscience Information Framework, UC San Diego), Anita Bandrowski (Neuroscience Information Framework, UC San Diego), Andrea Arnaud Stagg (Neuroscience Information Framework, UC San Diego), Jonathan Cachat (Neuroscience Information Framework, UC San Diego), Ruggero Carloz (Neuroscience Information Framework, UC San Diego), Fahim Imam (Neuroscience Information Framework, UC San Diego), Eddy Kim (Neuroscience Information Framework, UC San Diego), David Peterson (Institute for Neural Computation, UC San Diego), Luan Pham (Neuroscience Information Framework, UC San Diego), Willy Wong (Neuroscience Information Framework, UC San Diego), Jeff Grethe (Neuroscience Information Framework, UC San Diego), Maryann Martone (Neuroscience Information Framework, UC San Diego)
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OMNI: Towards a comprehensive object model for neuroinformatics
Stephen Larson (Whole Brain Project, UC San Diego), Sean Hill (INCF)
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The Whole Brain Catalog: Platform for neuroscientific data integration
Stephen Larson (Whole Brain Project, UC San Diego), Jesus Martinez (Whole Brain Project, UC San Diego), Vadim Astakhov (Whole Brain Project, UC San Diego), Chris Aprea (Whole Brain Project, UC San Diego), David Little (Whole Brain Project, UC San Diego), Richard Stoner (Whole Brain Project, UC San Diego), Sid Vijay (Whole Brain Project, UC San Diego), Maryann Martone (Whole Brain Project, UC San Diego), Mark Ellisman (Whole Brain Project, UC San Diego)
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Generation of Neural Network Models of the Brain by Evolutionary Computation
Masayuki Kikuchi (School of Computer Science, Tokyo University of Technology), Kousei Watanabe (Graduate School of Bionics, Computer and Media Sciences, Tokyo University of Technology)
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Prediction of Illness severity rating scores from structural brain scans in Major Depressive Disorder.
Benson Mwangi (Centre for Neurosciences, Division of Medical Sciences, University of Dundee), Keith Matthews (Centre for Neurosciences, Division of Medical Sciences, University of Dundee), Douglas Steele (Centre for Neurosciences, Division of Medical Sciences, University of Dundee)
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Reproducible research for neuroimaging
Jarrod Millman (UC Berkeley), Matthew Brett (UC Berkeley)
Computational neuroscience (38)
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Local learning rules for spiking neurons with dendrite.
Olivier F.L. Manette (CNRS)
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How reliable is spike train reconstruction from Calcium imaging data?
Felipe Gerhard (Brain Mind Institute, EPFL, Lausanne), Wulfram Gerstner (Brain Mind Institute, EPFL, Lausanne)
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3D reverse engineering and simulation of signal flow in anatomically realistic neuronal networks
Marcel Oberlaender (Max Planck Florida Institute, Jupiter), Christiaan deKock (VU University Amsterdam), Randy Bruno (Columbia University, New York), Stefan Lang (IWR, Heidelberg), Bert Sakmann (Max Planck Florida Institute, Jupiter)
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Single Neuron Development - A Neurogenesis Inspired Structure Generation Model
Venkateswaran Nagarajan (Director, WAran Research FoundaTion), Dinesh Kannan Kabaleeswaran (Computational Neuroscience, WARFT), Vignesh SR (Computational Neuroscience, WARFT), Subbu Ramanathan (Computational Neuroscience, WARFT), Sharan Srinivas Jagathrakshakan (Computational Neuroscience, WARFT), Narendran Narayanasamy (Computational Neuroscience, WARFT), Sudarshan Sekhar (Computational Neuroscience, WARFT), Sharath Navalpakkam Krishnan (Computational Neuroscience, WARFT), T.S. Thiagarajan (Computational Neuroscience, WARFT)
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Multicompartmental Model of Neurons Expressing Channelrhodopsin
Konstantin Nikolic (Imperial College London), Nir Grossman (Imperial College London)
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Using Contiguous Bi-Clustering for data driven temporal analysis of fMRI based functional connectivity
Adi Maron-Katz (School of Computer Science, Tel-Aviv University, Tel-Aviv 69978, Israel), Eti Ben Simon (Functional Brain Imaging Unit, Wohl Institute for Advanced Imaging, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel), Yael Jacob (Functional Brain Imaging Unit, Wohl Institute for Advanced Imaging, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel), Keren Rosenberg (Functional Brain Imaging Unit, Wohl Institute for Advanced Imaging, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel), Richard M. Karp (International Computer Science Institute, 1947 Center St., Berkeley, CA 94704), Talma Hendler (Functional Brain Imaging Unit, Wohl Institute for Advanced Imaging, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel), Ron Shamir (School of Computer Science, Tel-Aviv University, Tel-Aviv 69978, Israel)
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The brain's recognition dynamics: A statistical mechanical formulation
Chang Sub Kim (Department of Physics, Chonnam National University)
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Fitting drift-diffusion models in a hierarchical Bayesian framework: methods and applications
Thomas V. Wiecki (Brown University), Imri Sofer (Brown University), Michael J. Frank (Brown University)
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Spike-timing-dependent plasticity and subcortical waves enhance alpha oscillations in a computer model of neocortex
Samuel Neymotin (SUNY Downstate / NYU-Poly), Cliff Kerr (SUNY Downstate / U Sydney), George Chadderdon (SUNY Downstate), Christopher Fietkiewicz (SUNY Downstate), William Lytton (SUNY Downstate / Kings County Hospital)
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Speeding 25 fold Neural Network Simulations with GPU Processing.
Olivier F.L. Manette (CNRS), German Hernandez (Systems and Computing, National University of Colombia, Bogota)
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Modeling cognitive states using machine learning techniques
Mete Özay (Department of Computer Engineering, METU, Turkey), İlke Öztekin (Department of Psychology, Koç University, Istanbul, Turkey), Uygar Öztekin (Google Inc., USA), Fatoş T. Yarman Vural (Department of Computer Engineering, METU, Turkey)
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Real-Time Spike Detection For Robotic Control
Jose Manuel Ferrández Vicente (Departamento de Electrónica, Tecnología de Computadoras y Proyectos, Universidad Politécnica de Cartagena, Spain), Víctor Lorente Sánchez (Departamento de Electrónica, Tecnología de Computadoras y Proyectos, Universidad Politécnica de Cartagena, Spain), Eduardo Fernández Jover (Instituto de Bioingeniería, Universidad Miguel Hernández, Alicante, Spain)
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A graph-based database of hierarchical brain features
Noah Lee (Columbia University), Arno Klein (Columbia University)
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Auditory contours and Gestalt rules for sound analysis
Yoonseob Lim (Boston University), Barbara Shinn-Cunningham (Boston University), Timothy Gardner (Boston University)
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Spike train statistics of simulated and in vitro data
Kerstin Lenk (Lausitz University of Applied Sciences), Barbara Priwitzer (Lausitz University of Applied Sciences)
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Network Analysis of Neurodegenerative Diseases : A System based Approach to Uncover Perturbed Networks
Suhas Vasaikar (Indian Institute of Technology Delhi), Aditya Padhi (Indian Institute of Technology Delhi), James Gomes (Indian Institute of Technology Delhi)
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Gradient based axon growth modelling of different cell types with specific growth features in the spinal cord of hatchling Xenopus tadpole
Abul Kalam al Azad (School of Computing and Mathematics, University of Plymouth, UK.), Roman Borisyuk (School of Computing and Mathematics, University of Plymouth, UK.), Stephen R Soffe (School of Biology, University of Bristol, UK.), Alan Roberts (School of Biology, University of Bristol, UK.)
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Self-Gating Effect at the Rat Neuromuscular Junction
Mohammed Mostafizur Rahman (NeuroChip Lab, University of Padova), Mufti Mahmud (NeuroChip Lab, University of Padova), Stefano Vassanelli (NeuroChip Lab, University of Padova)
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Prediction of Blood Brain Barrier Permeation based on Molecular Indices
Lanting Li (Chinese Academy of Sciences)
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Neural Coding, Flash Memory Stores and Symbolic Representation
Donald M. O'Malley (Northeastern University)
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Neurodynamic state fluctuations in the epileptic brain
Catherine Stamoulis (Childrens Hospital Boston /Harvard Medical School), Bernard S. Chang (Beth Israel Deaconess Medical Center /Harvard Medical School)
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Dynamic functional networks in human seizure activity
Mark Kramer (Boston University), Uri Eden (Boston University), Eric Kolaczyk (Boston University), Sydney Cash (Harvard Medical School, Mass General Hospital)
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Dissecting Inhibitory Control of Striatal Projection Neurons
Damodaran Sriraman (George Mason University), Kim Blackwell (George Mason University)
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Measuring Partial Phase Locking Value to Detect Synchronization in Multivariate Gaussian Systems
Sergul Aydore (Signal and Image Processing Institute, University of Southern California), Dimitrios Pantazis (McGovern Institute for Brain Research, Massachusetts Institute of Technology), Richard Leahy (Signal and Image Processing Institute, University of Southern California)
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Simulating the Development of the Superficial Patch System
Roman Bauer (Institute of Neuroinformatics, UZH/ETH, Zürich Switzerland), Frédéric Zubler (Institute of Neuroinformatics, UZH/ETH, Zürich Switzerland), Rodney Douglas (Institute of Neuroinformatics, UZH/ETH, Zürich Switzerland)
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Sparse Bayesian identification of synaptic connectivity from multi-neuronal spike train data
Junichiro Yoshimoto (Okinawa Institute of Science and Technology), Kenji Doya (Okinawa Institute of Science and Technology)
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Multiscale Models in MOOSE: Interoperability and Standardization
Upinder Bhalla (National Centre for Biological Sciences, TIFR, Bangalore, INDIA), Subhasis Ray (National Centre for Biological Sciences, TIFR, Bangalore, INDIA), Niraj Dudani (National Centre for Biological Sciences, TIFR, Bangalore, INDIA), Siji George (National Centre for Biological Sciences, TIFR, Bangalore, INDIA), Aditya Gilra (National Centre for Biological Sciences, TIFR, Bangalore, INDIA), GV Harsharani (National Centre for Biological Sciences, TIFR, Bangalore, INDIA)
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Small World is Not Enough: How The Emergence of Resting State Properties Depends on Graph Theoretical Principals of the Underlying Structural Connectivity
Mario Senden (Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, the Netherlands), Gustavo Deco (Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain)
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Dendritic spine dynamics stabilize synaptic plasticity
Cian O'Donnell (School of Informatics, University of Edinburgh), Matthew Nolan (Centre for Integrative Physiology, University of Edinburgh), Mark van Rossum (School of Informatics, University of Edinburgh)
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ITDs curve steepness is influenced by stochastic delays in auditory pathways
Viacheslav Vasilkov (A.B.Kogan Research Institute for Neurocybernetics, Southern Federal University), Ruben Tikidji-Hamburyan (A.B.Kogan Research Institute for Neurocybernetics, Southern Federal University; LSU Health Sciences Center)
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Parallel implementation of a biologically inspired model of figure-ground segregation: Application to real-time data using MUSIC
Ali Nazem (CVAP/PDC, CSC, KTH), Gert Kootstra (CVAP, CSC, KTH), Danica Kragic (CVAP, CSC, KTH), Mikael Djurfeldt (PDC, CSC, KTH / INCF, Karolinska Institutet)
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How are circadian rhythms of orexin and serotonin affected by the dorsal raphe nucleus and lateral hypothalamus area interactions?
Alok Joshi (Intelligent Systems Research Centre,University of Ulster, Magee Campus, Londonderry, BT487JL, Northern Ireland, UK), KongFatt Wong-Lin (Intelligent Systems Research Centre,University of Ulster, Magee Campus, Londonderry, BT487JL, Northern Ireland, UK), T. Martin McGinnity (Intelligent Systems Research Centre,University of Ulster, Magee Campus, Londonderry, BT487JL, Northern Ireland, UK), Girijesh Prasad (Intelligent Systems Research Centre,University of Ulster, Magee Campus, Londonderry, BT487JL, Northern Ireland, UK)
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Developmental motives in cerebral cortex development
Sabina Sarah Pfister (Institute of Neuroinformatics, Uni/ETH Zurich), Rodney Douglas (Institute of Neuroinformatics, Uni/ETH Zurich), Colette Dehay (Stem Cell and Brain Resarch, INSERM Lyon), Henry Kennedy (Stem Cell and Brain Resarch, INSERM Lyon)
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Multi-Stage Modeling of the Kinetics of Activation of CaMKII
Melanie Stefan (Div. of Biology, Caltech, Pasadena CA), Shirley Pepke (Div. of Biology, Caltech, Pasadena CA), Stefan Mihalas (Div. of Biology, Caltech, Pasadena CA), Thomas Bartol (Salk Institute, La Jolla, CA), Terrence Sejnowski (Salk Institute, La Jolla, CA), Mary Kennedy (Div. of Biology, Caltech, Pasadena CA)
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Online competitive incremental-decremental clustering with the Winner-Kill-Loser rule
Jasmin Leveille (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Isao Hayashi (Faculty of Informatics, Kansai University, Takatsuki, Osaka 569-1095, Japan), Kunihiko Fukushima (Faculty of Informatics, Kansai University, Takatsuki, Osaka 569-1095, Japan), Massimiliano Versace (Center of Excellence for Learning in Education, Science, and Technology, Boston University)
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The connectome of the rat central nervous system in neuroVIISAS
Oliver Schmitt (Dep. of Anatomy, University of Rostock), Peter Eipert (Dep. of Anatomy, University of Rostock), Andreas Wree (Dep. of Anatomy, University of Rostock), Klaus-Peter Schmitz (Dep. of Biomedical Engeneering, University of Rostock)
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Multiscale modeling through MUSIC multi-simulation: Modeling a dendritic spine using MOOSE and NeuroRD
Maya Brandi (PDC, KTH, Stockholm and CSC, KTH, Stockholm), Ekaterina Brocke (CSC, KTH, Stockholm, National Centre for Biological Sciences, Bangalore, India), Husain Ahammad Talukdar (CSC, KTH, Stockholm), Michael Hanke (CSC, KTH, Stockholm), Upinder Bhalla (National Centre for Biological Sciences, Bangalore, India), Mikael Djurfeldt (PDC, KTH, Stockholm and INCF, KI, Stockholm), Jeanette Hellgren Kotaleski (CSC, KTH, Stockholm and INCF, KI, Stockholm)
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Molecular mechanisms of STDP define the properties of associative learning in a model of the hippocampal CA1 microcircuit
Ausra Saudargiene (Vytautas Magnus University, Lithuania), Giedre Slivko (Vytautas Magnus University, Lithuania), Bruce P. Graham (Institute of Computer Science and Mathematics, University of Stirling, UK )
Digital atlasing (17)
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NeuroMorphoNaut: An Open Source Tool to Make Anatomy Less Tedious
Andrew J. Worth (Neuromorphometrics, Inc.), Gregory L. Millington (Neuromorphometrics, Inc.), Jason Tourville (Boston University)
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Integration of 3D gene expression maps of ViBrism-DB into the standard coordinate Waxholm Space
Yuko Okamura-Oho (Bio-research Infrastructure Construction Team, RIKEN Advanced Science Institute, Japan), Masaomi Nishimura (Bio-research Infrastructure Construction Team, RIKEN Advanced Science Institute, Japan), Satoko Takemoto (Bio-research Infrastructure Construction Team, RIKEN Advanced Science Institute, Japan), Hideo Yokota (Bio-research Infrastructure Construction Team, RIKEN Advanced Science Institute, Japan), Gang Song (Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania, USA), James Gee (Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania, USA)
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A Digital Atlas of the Guinea Pig Brain. A Comparative Study of qMRI at 3T with Histological Sections.
Marie Drottar (Boston University Division of Graduate Medical Sciences: BioImaging Program), Hernan Jara (Boston University Medical School Department of Radiology)
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Serving three-dimensional models of brain structures online
Piotr Majka (Nencki Institute of Experimental Biology, Poland), Jakub M. Kowalski (Nencki Institute of Experimental Biology, Poland), Rembrandt Bakker (Radboud University Nijmegen, Donders Institute for Brain, Cognition and Behaviour, Netherlands), Daniel K. Wójcik (Nencki Institute of Experimental Biology, Poland)
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Bringing Data into the INCF Digital Atlas-based Sharing Framework
Jyl Boline (Informed Minds, USA), Richard Baldock (MRC Human Genetics Unit and IGMM, UK), Rembrandt Bakker (Radboud University, Netherlands), Janis Breeze (INCF, Sweden), Albert Burger (MRC Human Genetics Unit and Heriot-Watt University), James Gee (University of Pennsylvania, Philadelphia, USA), Christian Haselgrove (University of Massachusetts Medical Center, USA), Mike Hawrylycz (Allen Institute for Brain Science, USA), Andreas Hess (Institute of Experimental and Clinical Pharmacology and Toxicology, Germany), Luis Ibanez (Kitware Inc., Clifton Park, USA), G. Allan Johnson (Duke Center for In Vivo Microscopy, USA), Stephen Larson (University of California, USA), Lydia Ng (Allen Institute for Brain Science, USA), Yuko Okamura-Oho (RIKEN Advanced Science Institute, Wako, Japan), Seth Ruffins (Biological Imaging Center, California Institute of Technology, USA), Fons Verbeek (Leiden Institute of Advanced Computer Science, Leiden University, Netherlands), Ilya Zaslavsky (San Diego Supercomputer Center, University of California, USA)
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Plugin architecture for the INCF Scalable Brain Atlas: CoCoMac and beyond
Rembrandt Bakker (Donders Institute, Radboud University Nijmegen), Markus Diesmann (Institute of Neuroscience and Medicine (INM-6), Research Center Jülich), Thomas Wachtler (Department Biology II, Ludwig-Maximilians-Universität München)
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Three-dimensional atlas framework for mapping of projections from the entorhinal cortex to the hippocampal formation in rat
Lisa J Kjønigsen (CMBN & IMB, UIO, Oslo, Norway), Trygve B Leergaard (CMBN & IMB, UIO, Oslo, Norway), Menno P Witter (KI-CBM, NTNU, Trondheim, Norway & Dept. of Anatomy & Neuroscience, VUmc, Amsterdam, The Netherlands), Jan G Bjaalie (CMBN & IMB, UIO, Oslo, Norway)
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Atlas Registration Services and Workflows within the INCF Digital Atlasing Infrastructure for Rodent Brain
Ilya Zaslavsky (San Diego Supercomputer Center, University of California San Diego, USA), Steven Lamont (University of California San Diego, USA), Asif Memon (University of California San Diego, USA), Luis Ibanez (Kitware, Inc., USA), James Gee (University of Pennsylvania, USA), Stephen Larson (University of California San Diego, USA), David Little (University of California San Diego, USA), David Valentine (San Diego Supercomputer Center, University of California San Diego, USA), Richard Baldock (MRC Human Genetics Unit and IGMM, UK), Mike Hawrylycz (Allen Institute for Brain Science, USA), Janis Breeze (INCF, Sweden), Raphael Ritz (INCF, Sweden), Jyl Boline (Informed Minds, USA)
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Development of Standard Services for Integrating Rodent Brain Atlases Based on Spatial Location
Ilya Zaslavsky (San Diego Supercomputer Center, University of California San Diego, USA), Asif Memon (University of California San Diego, USA), David Little (University of California San Diego, USA), David Valentine (San Diego Supercomputer Center, University of California San Diego, USA), Stephen Larson (University of California San Diego, USA), Raphael Ritz (INCF, Sweden), Steven Lamont (University of California San Diego, USA), Richard Baldock (MRC Human Genetics Unit and IGMM, UK), Rembrandt Bakker (Radboud University, Netherlands), Albert Burger (MRC Human Genetics Unit and Heriot-Watt University, UK), Christian Haselgrove (University of Massachusetts Medical Center, USA), Mike Hawrylycz (Allen Institute for Brain Science, USA), Andreas Hess (Institute of Experimental and Clinical Pharmacology and Toxicology, Germany), Lydia Ng (Allen Institute for Brain Science, USA), Daren Lee (University of California Los Angeles, USA), Seth Ruffins (Biological Imaging Center, California Institute of Technology, USA), Fons Verbeek (Leiden Institute of Advanced Computer Science, Netherlands), Janis Breeze (INCF, Sweden), Jyl Boline (Informed Minds, USA)
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Open Connectome Project: reverse engineering the brain one synapse at a time
Joshua Vogelstein (Johns Hopkins University), Eric Perlman (Johns Hopkins University), Davi Bock (Janelia Farm Research Campus), Wei-Chung Lee (Harvard University), Bobby Kasthuri (Harvard University), Jeff Lichtman (Harvard University), Clay Reid (Harvard University), Albert Cardona (Institute of Neuroinformatics), Randal Burns (Johns Hopkins University), R. Jacob Vogelstein (Johns Hopkins University Applied Physics Laboratory)
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Neuroinformatics web applications for 3-D analysis of brain connectivity: anatomical organization of subcortical projections from whisker and forelimb regions of the rat somatosensory cortex
Izabela Maria Zakiewicz (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway), Jan G Bjaalie (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway), Trygve B Leergaard (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway)
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Multimodal digital atlas of the rat brain: data integration in a high resolution volumetric template
Eszter A Papp (University of Oslo), Trygve B Leergaard (University of Oslo), Y Jiang (Duke University Medical Center), G. Allan Johnson (Duke University Medical Center), Jan G Bjaalie (University of Oslo)
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Constrain your data: relating detailed animal studies to spatial templates in neuroimaging
Gleb Bezgin (Rotman Research Institute at Baycrest ), Rembrandt Bakker (Donders Institute for Brain, Cognition and Behavior)
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Knife-Edge Scanning Microscope Brain Atlas: A Web-Based, Light-Weight 3D Mouse Brain Atlas
Chul Sung (Texas A&M University), Ji Ryang Chung (Texas A&M University), David Mayerich (University of Illinois, Urbana-Champaign), Jaerock Kwon (Kettering University), Daniel Miller (Texas A&M University), Todd Huffman (3Scan), John Keyser (Texas A&M University), Louise Abbott (Texas A&M University), Yoonsuck Choe (Texas A&M University)
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Reconstruction of the mouse brain regions from the spatial gene expression data
Alexey Tsvetkov (Russian Scientific Centre “Kurchatov Institute”, Nano-, Bio-, Info-, Cognitive (NBIC) Center)
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Rodent Brain Navigator: database and atlas system for microscopy and imaging data
Ivar Moene (University of Oslo), Dmitri Darine (University of Oslo), Muthuraja Ramachandran (University of Oslo), Trygve B. Leergaard (University of Oslo), Jan G Bjaalie (University of Oslo)
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Automated Atlas Annotation for Transgenic Mouse Lines
Ken Sugino (Brandeis University), Yao Cheng (Brandeis University), Sacha Nelson (Brandeis University)
Neuroimaging (33)
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Uncovering intrinsic connectional architecture of functional networks in awake rat brain
Zhifeng Liang (University of Massachusetts Med. School), Jean King (University of Massachusetts Med. School), Nanyin Zhang (University of Massachusetts Med. School)
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Prediction of Illness severity rating scores from structural brain scans in Major Depressive Disorder.
Benson Mwangi Irungu (University of Dundee,Scotland UK), Keith Matthews (University of Dundee,Scotland UK), Douglas Steele (University of Dundee Scotland UK)
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BrainTrap Comparisons: Fly Brain Protein Trap Data Analysis
Seymour Knowles-Barley (The University of Edinburgh), J Douglas Armstrong (The University of Edinburgh)
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Identification and Classification of Functional Modules in the Brain
Jane Wang (Northwestern University), Luis Amaral (Northwestern University, HHMI), James Booth (Northwestern University)
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Using neuRosim to simulate magnitude fMRI data containing physiological noise
Marijke Welvaert (Department of Data Analysis), Yves Rosseel (Department of Data Analysis)
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Fast, fully automated MRI-based measurement of the human corpus callosum
Timothy J Herron (US Veterans Affairs, Neurology), Xiaojian Kang (UC Davis, Neurology & Neuroscience), And U Turken (US Veterans Affairs Research), David L Woods (US Veterans Affairs & UC Davis)
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Dynamical causal modeling of fMRI time series at 3T: effect of the magnetic field mismatch
Patrick Dupont (Labo for cognitive neurology and Medical Imaging Research Center, K.U.Leuven), Céline Gillebert (Labo for cognitive neurology, K.U.Leuven), Natalie Nelissen (Labo for cognitive neurology, K.U.Leuven), Rik Vandenberghe (Labo for cognitive neurology, K.U.Leuven and Neurology Department, UZLeuven)
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Do ontological concepts stand up to a meta-analysis of neuroimaging data?
Jessica Turner (Mind Research Network, Albuquerque, NM), Peter Fox (Research Imaging Center, UTHSCSA, San Antonio, TX), Christian Beckmann (FMRIB (Oxford University Centre for Functional MRI of the Brain), University of Oxford, Oxford, UK), Stephen Smith (FMRIB (Oxford University Centre for Functional MRI of the Brain), University of Oxford, Oxford, UK), Angela Laird (Research Imaging Center, UTHSCSA, San Antonio, TX)
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Segregation and Integration of Cortical Connections in the Developing Brain
Budhachandra Khundrakpam (McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Canada), Andrew Reid (McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Canada), Jens Brauer (Max Planck Institute for Human Cognitive Sciences, Leipzig, Germany), Junki Lee (McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Canada), Felix Carbonell (McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Canada), Gaolang Gong (McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Canada), Zhang Chen (McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Canada), Yong He (State Key Laboratory of Cognitive Neuroscience & Learning, Beijing Normal University, Beijing, China), Alan Evans (McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Canada)
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EEG Source Estimation via Cortical Graph Smoothing
David Hammond (NeuroInformatics Center, University of Oregon), Benoit Scherrer (Computational Radiology Laboratory, Children's Hospital, Boston MA)
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Integration of Semantically Annotated Neuroimaging Data via Chained Queries
Nolan Nichols (University of Washington), Jessica Turner (Mind Research Network), Landon Detwiler (University of Washington), Jose Mejino (University of Washington), Daniel Rubin (Stanford University), James Brinkley (University of Washington)
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Intrinsic functional architecture predicts electrically evoked responses in the human brain
Corey Keller (Albert Einstein College of Medicine), Stephan Bickel (North Shore LIJ Health System), Laszlo Entz (eInstitute for Psychology of the Hungarian Academy of Sciences), Fred Lado (Department of Neurology, Montefiore Medical Center), Istvan Ulbert (eInstitute for Psychology of the Hungarian Academy of Sciences), Clare Kelly (New York University Child Study Center), Michael Milham (New York University Child Study Center), Ashesh Mehta (North Shore LIJ Health System)
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Modeling Neural Collaboration: Measuring the Odds of Cooperation in the Gyri of Frontal Lobes
Jeff B. Cromwell (Department of Biomedical Informatics, University of Pittsburgh School of Medicine)
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Source space effective connectivity analysis of MEG/EEG data using Kalman filter based time-varying Granger causality
Ricky Sachdeva (Massachusetts General Hospital, Athinoula A. Martinos Center for Biomedical Imaging), Seppo Ahlfors (Massachusetts General Hospital, Athinoula A. Martinos Center for Biomedical Imaging), David Gow (Massachusetts General Hospital, Athinoula A. Martinos Center for Biomedical Imaging, Salem State University)
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NeuroSynth: a new platform for large-scale automated synthesis of human functional neuroimaging data
Tal Yarkoni (University of Colorado - Boulder), Russell A. Poldrack (University of Texas - Austin), Thomas E. Nichols (University of Warwick), David C. Van Essen (Washington University School of Medicine), Tor D. Wager (University of Colorado - Boulder)
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Brain decoding and networks studies: well beyond standard analysis in fMRI with Python and scikits.learn
Gael Varoquaux (Unicog INSERM, Neurospin, France), Alexandre Gramfort (Martinos Center, Harvard Medical School, MGH, Boston), Michel Vincent (Parietal INRIA, Neurospin, France), Fabian Pedregosa (Parietal INRIA, Neurospin, France), Bertrand Thirion (Parietal INRIA, Neurospin, France)
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Hemispheric asymmetries in the resting-sate functional connectivity patterns of the brain regions critical for language comprehension
And U. Turken (Veterans Affairs Northern California Health Care System, Martinez, CA), Nina F. Dronkers (Veterans Affairs Northern California Health Care System, Martinez, CA; and UC Davis Neurology Department, Davis, CA)
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Prediction of weight and aerobic fitness with resting-state fMRI
Jeremy Huckins (Dartmouth College), Kathryn Demos (Brown University), Todd Heatherton (Dartmouth College), William Kelley (Dartmouth College)
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Methods for Analyzing Data on Cortical Activation by Voltage-Sensitive Dye
Mark Reimers (Biostatistics, VCU)
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Methods for Correcting Artifacts in FMRI Time Series
Mark Reimers (Biostatistics, VCU)
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Statistical Significance of Modular Structure Detection
Yu-Teng Chang (Signal and Image Processing Institute, University of Southern California, Los Angeles, CA), Dimitrios Pantazis (McGovern Institute for Brain Research, MIT, Boston, MA, USA), Richard Leahy (Signal and Image Processing Institute, University of Southern California, Los Angeles, CA)
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The Neuroimaging Informatics Tools and Resources Clearinghouse: Year 4 Update
David Kennedy (Univ. of Massachusetts Medical Center), Christian Haselgrove (Univ. of Massachusetts Medical Center), Nina Preuss (TCG, Inc), Maryann Martone (University of California at San Diego), Jeff Grethe (University of California at San Diego,)
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Relating function to structure: fMRI in (transgenic) mice and the Waxholm Space Reference System
Andreas Hess (I.f. Pharmacology, FAU Erlangen Nuremberg, Germany), Silke Kreitz (I.f. Pharmacology, FAU Erlangen Nuremberg, Germany), Marina Sergejeva (I.f. Pharmacology, FAU Erlangen Nuremberg, Germany), Alexandra Badea (Center for In Vivo Microscopy, Duke University, USA), G. Allan Johnson (Center for In Vivo Microscopy, Duke University, USA), Laura Konnerth (I.f. Pharmacology, FAU Erlangen Nuremberg, Germany)
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Predicting functional activity from structural connectivity
David Osher (MIT), Zeynep Saygin (MIT), John D.E. Gabrieli (MIT)
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Web-based collaborative neuronal reconstruction with CATMAID
Stephan Gerhard (Institute of Neuroinformatics, UZH / ETHZ, Zürich), Mark Longair (Institute of Neuroinformatics, UZH / ETHZ, Zürich), Stephan Saalfeld (Max Planck Institute of Molecular Cell Biology and Genetics, Dresden), Pavel Tomancak (Max Planck Institute of Molecular Cell Biology and Genetics, Dresden), Albert Cardona (Institute of Neuroinformatics, UZH / ETHZ, Zürich)
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Resting state connectivity changes in rat model of per-motor stage Parkinson’s disease
Pallavi Rane (Center for Comparative NeuroImaging, University of Massachusetts Medical School, Worcester, MA, USA), Jean King (Center for Comparative NeuroImaging, University of Massachusetts Medical School, Worcester, MA, USA)
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CANDIShare: A Resource for Pediatric Neuroimaging Data
Steven Hodge (Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA), David Kennedy (Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA), Christian Haselgrove (Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA), Jean Frazier (Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA)
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Keeping it Simple: Sharing 2631+ Resting State fMRI Datasets Through the FCP, INDI and ADHD-200 Sample
Maarten Mennes (NYU Langone Medical Center, New York, NY, USA), F. Xavier Castellanos (NYU Langone Medical Center, New York, NY, USA & Nathan Kline Institute for Psychiatric Research, Orangeburg, NY, USA), Michael P. Milham (NYU Langone Medical Center, New York, NY, USA & Nathan Kline Institute for Psychiatric Research, Orangeburg, NY, USA)
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Network Analysis of Pain Processing: Pain is more than Sensation
Silke Kreitz (I. f. Pharmacology, FAU-Erlangen/Nuremberg, Germany), Marina Sergejeva (I. f. Pharmacology, FAU-Erlangen/Nuremberg, Germany), Andreas Hess (I. f. Pharmacology, FAU-Erlangen/Nuremberg, Germany)
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A toolbox for the visualization and metaanalysis of functional organization of the cortex using an anatomical database
Timothy J Herron (US Veterans Affairs Research), Anthony D Cate (US Veterans Affairs Research), Xiaojian Kang (UC Davis Neurology and Center for Neuroscience), David L Woods (US Veterans Affairs and UC Davis)
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Accessing and scripting Neuroimaging XNAT databases with PyXnat
Yannick Schwartz (Neurospin-I2BM-CEA), Alexis Barbot (Neurospin-I2BM-CEA), Vincent Frouin (Neurospin-I2BM-CEA), Benjamin Thyreau (Neurospin-I2BM-CEA), Gael Varoquaux (Neurospin-INRIA), Bertrand Thirion (Neurospin-INRIA), Jean-Baptiste Poline (Neurospin-I2BM-CEA)
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A method for reducing cross-talk in MEG data with subspace suppression and the nulling beamformer
Kunjan Rana (Boston University, Boston, MA, USA), Lucia Maria Vaina (Boston University& Harvard Medical School, Massachusetts General Hospital, USA), Matti Hämäläinen (Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA)
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Investigation of NeuroDevelopment using MRS and Functional Connectivity
Elif Sikoglu (CCNI, UMASS Medical School), Ana Liso (CCNI, UMASS Medical School), Nanyin Zhang (CCNI, UMASS Medical School), David Kennedy (CANDI, UMASS Medical School), Jean Frazier (CANDI, UMASS Medical School), Jean King (CCNI, UMASS Medical School), Constance Moore (CCNI, UMASS Medical School)
Genomics and genetics (6)
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Visual Informatics and Computational Genomics using the Graphical Pipeline Environment
Ivo Dinov (UCLA), Federica Torri (UCI), Fabio Macciardi (UCI), Alen Zamanyan (UCLA), Arthur Toga (UCLA)
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Gene Orientation and Non-coding Transcripts Modulate Noise Levels
Guang-Zhong Wang (Institute of Biophysics, CAS, China), Martin J. Lercher (University of Düsseldorf, Germany), Laurence D. Hurst (University of Bath, UK)
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A neuroinformatics framework for gene expression meta-analysis
Paul Pavlidis (University of British Columbia), Anton Zoubarev (University of British Columbia), Kelsey Hamer (University of British Columbia), Kiran Keshav (Columbia University)
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Estimation of Kinetic Parameters of PCR Process Using Genetic Algorithm
Lanting Li (Chinese Academy of Sciences)
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Partial Least Squares-Correspondence Analysis (PLS-CA): A New Method to Analyze Common Patterns in Measures of Cognition and Genetics
Derek Beaton (The University of Texas at Dallas), Hervé Abdi (The University of Texas at Dallas)
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HID-Genetics: A Federated BIRN-enabled Data Management System for Clinical, Imaging, and Genome-Wide Association Studies
David Keator (University of California, Irvine), Jinran Chen (University of California, Irvine), Naveen Ashish (University of California, Irvine), Federica Torri (University of California, Irvine), Anita Lakatos (University of California, Irvine), Steven Potkin (University of California, Irvine), Fabio Macciardi (University of California, Irvine), Dingying Wei (University of California, Irvine)
Large scale modeling (12)
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Bridging the gap between Computational Neuroscience and Systems Biology modelling
Padraig Gleeson (Department of Neuroscience, Physiology and Pharmacology, UCL, UK), Sharon Crook (School of Mathematical and Statistical Sciences, School of Life Sciences, Center for Adaptive Neural Systems, ASU, USA), Robert Cannon (Textensor Limited, Edinburgh, UK), R Angus Silver (Department of Neuroscience, Physiology and Pharmacology, UCL, UK)
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Statistical Parametric Networks (SPNs): A Principled Way of Constructing Functional and Anatomical Networks.
Cedric Ginestet (King's College London), Andrew Simmons (King's College London), Ed Bullmore (University of Cambridge), Thomas E. Nichols (Warwick University)
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A large-scale whole visual system model integrated by PLATO and its implementation on high performance computer
Keiichiro Inagaki (RIKEN, Computational science research program), Takayuki Kannon (RIKEN, Brain science institute), Yoshimi Kamiyama (Aichi prefectural university), Shunji Satoh (University of electro-communications), Nilton Kamiji (RIKEN, Brain science institute), Daiki Sone (Aichi prefectural university), Kazuki Urabe (University of electro-communications), Shiro Usui (RIKEN, Brain science institute)
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PLATO: Platform for integrating large-scale brain model from sub-system models
Takayuki Kannon (RIKEN Brain science institute), Keiichiro Inagaki (Computational Science Research Program, RIKEN), Nilton Kamiji (RIKEN Brain science institute), Kouji Makimura (RIKEN Brain science institute), Shiro Usui (RIKEN Brain science institute)
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Cx3Dp: A Parallel Framework for Modeling the Growth and Development of Neural Tissue
Andreas Hauri (Institute of Neuroinformatics ETHZ/UZH), Rodney Douglas (Institute of Neuroinformatics ETHZ/UZH)
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A realistic large-scale model of the retinal cone mosaic
Yoshimi Kamiyama (Information Science and Technology, Aichi Prefectural University), Daiki Sone (Information Science and Technology, Aichi Prefectural University), Shiro Usui (RIKEN Brain Science Institute)
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Managing Complexity in Multi-Algorithm, Multi-Scale Biological Simulations: An Integrated Software Engineering and Neuroinformatics Approach.
Giovanni Idili (Department of Computing, Cork Institute of Technology, Cork, Ireland), Matteo Cantarelli (Department of Electric and Electronic Engineering, Università di Cagliari, Cagliari, Italy), Marius Buibas (Department of Bioengineering, University of California, San Diego, La Jolla, CA), Tim Busbice (InterIntelligence Research, Los Angeles, CA), Jay Coggan (Salk Institute, La Jolla, CA), Christian Grove (WormBase, California Institute of Technology, Pasadena CA), Sergey Khayrulin (A.P. Ershov Institute of Informatics Systems SB RAS, Lab. of Complex Systems Simulation, Novosibirsk, Russia), Andrey Palyanov (A.P. Ershov Institute of Informatics Systems SB RAS, Lab. of Complex Systems Simulation, Novosibirsk, Russia), Stephen Larson (Whole Brain Project, University of California, San Diego, La Jolla, CA)
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LFPy: A tool for simulation of extracellular potentials
Henrik Linden (Mathematical Sciences and Technology, Norwegian University of Life Sciences), Espen Hagen (Mathematical Sciences and Technology, Norwegian University of Life Sciences), Szymon Leski (Nencki Institute of Experimental Biology, Warsaw, Poland), Eivind S Norheim (Mathematical Sciences and Technology, Norwegian University of Life Sciences), Klas H Pettersen (Mathematical Sciences and Technology, Norwegian University of Life Sciences), Gaute T Einevoll (Mathematical Sciences and Technology, Norwegian University of Life Sciences)
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A New State of MIIND
Dave Harrison (University of Leeds), Marc De Kamps (University of Leeds)
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Learning to see in a virtual world
Jasmin Leveille (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Gennady Livitz (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Heather Ames (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Ben Chandler (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Anatoli Gorchetchnikov (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Massimiliano Versace (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Ennio Mingolla (Center of Excellence for Learning in Education, Science, and Technology, Boston University), Greg Snider (Hewlett-Packard Laboratories)
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Scaling of a biophysical neocortical attractor model with Parallel NEURON
David Silverstein (Royal Institute of Technology, Stockholm Brain Institute), Anders Lansner (Royal Institute of Technology, Stockhom University, Stockholm Brain Institute)
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Evaluating the Connection-Set Algebra for the neural simulator NEST
Jochen Martin Eppler (Institute of Neuroscience and Medicine, Computational and Systems Neuroscience (INM-6), Research Center Jülich, Germany), Håkon Enger (Dept. of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Thomas Heiberg (Dept. of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Birgit Kriener (Dept. of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Hans Ekkehard Plesser (Dept. of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Markus Diesmann (Institute of Neuroscience and Medicine, Computational and Systems Neuroscience (INM-6), Research Center Jülich, Germany), Mikael Djurfeldt (PDC Center for High Performance Computing , KTH, Stockholm and INCF, Stockholm)
Neuromorphic engineering (0)
Brain machine interface (4)
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Understanding Human Implicit Intention based on EEG and Speech Signals
Suh-yeon Dong (Department of Electrical Engineering and Brain Science Research Center, KAIST), Daeshik Kim (Department of Electrical Engineering and Brain Science Research Center, KAIST), Soo-Young Lee (Department of Electrical Engineering and Brain Science Research Center, KAIST)
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Analysis of EEG signals for classification of car driver's vigilance level
David Coufal (Institute of Computer Science AS CR), Jan Klaschka (Institute of Computer Science AS CR), David Štefka (Institute of Computer Science AS CR)
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Modified Empirical Mode Decomposition to process EEG signal including artefacts
Jindřich Ciniburk (Department of Computer Science and Engineering, University of West Bohemia)
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Detection of ERP components - comparison of basic methods and their modifications
Tomas Rondik (Department of Computer Science and Engineering, University of West Bohemia), Jindřich Ciniburk (Department of Computer Science and Engineering, University of West Bohemia)
Electrophysiology (9)
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Estimation of functional connectivity using coupled Gamma processes
Felipe Gerhard (Brain Mind Institute, EPFL, Lausanne), Wulfram Gerstner (Brain Mind Institute, EPFL, Lausanne)
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TMS/EEG measures of cortical effective connectivity during wakefulness, NREM sleep, dreaming, anesthesia and coma.
Marcello Massimini (Department of Clinical Sciences)
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Modeling of the electrical activity of the Helisoma trivolvis B5 neurons
Vladimir Kotov (Neuroinformatics Dpt. , NIISI RAS, RF), Liana Artinian (Biology Dpt, GSU, Atlanta, GA, USA), Vincent Rehder (Biology Dpt, GSU, Atlanta, GA, USA), Witali Dunin-Barkowski (Neuroinformatics Dpt. , NIISI RAS, RF)
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New evidence to explain 'response decrement' in sensory ERPs
Anli Wang (University of Oxford), Meng Liang (University College London), Giandomenico Iannetti (University College London)
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Testing the long-term stability of a neural code in songbirds
Jeffrey Markowitz (Boston University)
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How collaborative projects that involve complicated electrophysiological data sets profit from workflow design
Michael Denker (Institute of Neuroscience and Medicine (INM-6), Research Center Jülich, 52428 Jülich, Germany), Andrew Davison (Unité de Neurosciences, Information et Complexité (UNIC), CNRS UPR-3293, 91198 Gif sur Yvette, France), Markus Diesmann (Institute of Neuroscience and Medicine (INM-6), Research Center Jülich, 52428 Jülich, Germany), Sonja Gruen (Institute of Neuroscience and Medicine (INM-6), Research Center Jülich, 52428 Jülich, Germany)
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Representation of freely-explored objects in the primary somatosensory cortex and hippocampus
Nivaldo A P Vasconcelos (FARN, FAL, IINNELS, UFCG), Edson Anibal Macedo (UFRN), Herman Martins Gomes (UFCG), Gilberto Corso (UFRN), Sidarta Ribeiro (UFRN)
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Overview of neuroinformatics infrastructure in Pilsen, CZ
Roman Mouček (Department of Computer Science and Eng..), Petr Ježek (Department of Computer Science and Eng..)
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PreSti – Neuroscience stimuli presentation software
Petr Jaroš (Department of Computer Science and Engineering, University of West Bohemia, Pilsen, Czech Republic), Roman Mouček (Department of Computer Science and Engineering, University of West Bohemia, Pilsen, Czech Republic), Petr Háka (Department of Computer Science and Engineering, University of West Bohemia, Pilsen, Czech Republic)
Infrastructural and portal services (9)
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DISCO: An Internet-based initiative to facilitate data integration for the Neuroscience Information Framework
Luis Marenco (Yale Center for Medical Informatics), Kei-Hoi Cheung (Yale Center for Medical Informatics), Rixin Wang (Yale Center for Medical Informatics), Gordon M. Shepherd (Department of Neurobiology, Yale Univ.), Perry L. Miller (Yale Center for Medical Informatics), NIF Consortium (http://www.neuinfo.org/)
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BrainLiner: A Platform for Neurophysiological Data Sharing and Manipulation
Makoto Takemiya (ATR Computational Neuroscience Laboratories, Department of Neuroinformatics), Satoshi Murata (ATR Computational Neuroscience Laboratories, Department of Neuroinformatics), Yukiyasu Kamitani (ATR Computational Neuroscience Laboratories, Department of Neuroinformatics)
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EEG/ERP portal - Extending object oriented code for the missing semantics using Java annotations
Petr Ježek (University of West Bohemia), Roman Mouček (University of West Bohemia)
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Simulation Platform: Quick and easy access environment of model simulation in computational neuroscience
Hidetoshi Ikeno (University of Hyogo), Tadashi Yamaaki (RIKEN Brain Science Institute), Yoshihiro Okumura (RIKEN Brain Science Institute), Shunji Satoh (University of Electro-Communications), Yoshimi Kamiyama (Aichi Prefectural University), Yutaka Hirata (Chubu University), Keiichiro Inagaki (RIKEN Brain Science Institute), Akito Ishihara (Chukyo University), Takayuki Kannon (RIKEN Brain Science Institute), Shiro Usui (RIKEN Brain Science Institute)
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Development and application of the Invertebrate Brain Platform (IVB-PF)
Akira Takashima (Research Center for Advanced Science and Technology, the University of Tokyo, Japan), Tomoki Kazawa (Research Center for Advanced Science and Technology, the University of Tokyo, Japan), Shigehiro Namiki (Research Center for Advanced Science and Technology, the University of Tokyo, Japan), S Shuichi Haupt (Research Center for Advanced Science and Technology, the University of Tokyo, Japan), Hidetoshi Ikeno (University of Hyogo), Ryohei Kanzaki (Research Center for Advanced Science and Technology, the University of Tokyo, Japan), Shiro Usui (RIKEN Brain Science Institute)
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The Computable Brain: an interactive website to allow exploration and sharing of functional imaging data
David Gutman (Emory University), Orion Keifer (Emory University), Erin Hecht (Emory University), Joel Saltz (Emory University)
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The Child's Brain: Applications of the Internet Brain Volume Database (IBVD)
Christian Haselgrove (Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA), Steven Hodge (Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA), Jean Frazier (Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA), David Kennedy (Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA)
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Developing formats for sharing electrophysiology data using CRCNS.org as a testbed
Jeff Teeters (UC Berkeley), Friedrich Sommer (UC Berkeley)
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A cloud-based data-sharing and analysis cyberinfrastructure for neuroinformatics
Richard Stoner (Autism Center of Excellence, University of California, San Diego), Stephen Larson (Whole Brain Project, University of California, San Diego), Ilya Zaslavsky (San Diego Supercomputing Center), Sean Hill (International Neuroinformatics Coordinating Facility), Mark Ellisman (Whole Brain Project, University of California, San Diego), Eric Courchesne (Autism Center of Excellence, University of California, San Diego)
Clinical neuroscience (2)
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Adaptive models of cortex cooperating with other brain parts
Josef Faber (CTU Prague), Mirko Novák (CTU Prague), Zdenek Votruba (CTU Prague), Vít Faber (Vodafone)
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Studying Brain & Behavior in Schizophrenia: Multivariate Surface Analysis of Hippocampus
Sunil Kalmady (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), Ganesan Venkatasubramanian (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), Rashmi Arasappa (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), S Gautham (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), Naren P Rao (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), Rishikesh Behere (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India), B N Gangadhar (Department of Psychiatry, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India)
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